Codon Pair Bias Is a Direct Consequence of Dinucleotide Bias
نویسندگان
چکیده
منابع مشابه
Codon Pair Bias Is a Direct Consequence of Dinucleotide Bias.
Codon pair bias is a remarkably stable characteristic of a species. Although functionally uncharacterized, robust virus attenuation was achieved by recoding of viral proteins using underrepresented codon pairs. Because viruses replicate exclusively inside living cells, we posited that their codon pair preferences reflect those of their host(s). Analysis of many human viruses showed, however, th...
متن کاملTranslational Efficiency and Codon Pair Bias: Conflicting Interpretations
In a recent publication in the journal Bioinformatics, Boycheva et al. 6 describe an empirical predictor for the translational step-times of codon pairs that differs from an experimentally verified statistically-based predictor previously described by Gutman and Hatfield. Here we review the statistical and experimental foundations for the Gutman and Hatfield conclusions and compare them to thos...
متن کاملMore Codon Usage Bias
χ measure. In statistics, the χ statstic computes how different the distribution of values is from a uniform distribution. Let d = c1 . . . cN be a DNA string in nucleotide alphabet, and let L be the total number of codons in d that are not Methinine or Tryptophan (the number does include the stop codons though). Let a be a k-degenerate amino acid, and let La be the total number of codons codin...
متن کاملSelection on codon bias.
In a wide variety of organisms, synonymous codons are used with different frequencies, a phenomenon known as codon bias. Population genetic studies have shown that synonymous sites are under weak selection and that codon bias is maintained by a balance between selection, mutation, and genetic drift. It appears that the major cause for selection on codon bias is that certain preferred codons are...
متن کاملMood-congruent free recall bias in anxious individuals is not a consequence of response bias.
The status of mood-congruent free recall bias in anxious individuals was evaluated following incidental encoding of target words. Individuals with high and low levels of trait anxiety completed a modified Stroop task, which revealed an attentional bias for threat-related stimuli in anxious individuals. This group was significantly slower in naming the colour in which threat-related words were d...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Cell Reports
سال: 2016
ISSN: 2211-1247
DOI: 10.1016/j.celrep.2015.12.011